species:   Rhsol
pid:       PID0569
parent:    Rhi-milR-107
paralog:   
locus:     KB317737.1:56848-56919
matures:   ['UAGGCUACUUGGACCACCUGGAG', 'CCAGUCUGUCACGAGUUGCGCUUUG']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317737.1:56848-56919

9 out of bounds
23 alignments
6 proper strand
6 stranded perfect matches

        **************************  ****************************        
GUUGCGUUCAUAGGCUACUUGGACCACCUGGAGGCUUGCCCAGUCUGUCACGAGUUGCGCUUUGACUCGGCU
((((.((.((.((((.((((((((...((((........))))...))).))))).)).)).)))).)))).
----------UAGGCUACUUGGACCACCUGGAG--------------------------------------- l=23 a=0 c
---------------------------------------CCAGUCUGUCACGAGUUGCGCUUUG-------- l=25 a=0 c*
----------UAGGCUACUUGGACCACCUGGAGG-------------------------------------- l=24 a=4 ma
--------------------------------------CCCAGUCUGUCACGAGUUGCGCUUUG-------- l=26 a=0 ma*

----------UAGGCUACUUGGACCACCUGGAGG-------------------------------------- l=24 a=4 (ma)
----------UAGGCUACUUGGACCACCUGGAGGC------------------------------------- l=25 a=2 

mb-01011
ax-1001011
ku-01
ss-111110001100
fn-101
